Index Symbols | _ | A | B | C | D | F | G | H | I | M | N | O | P | R | S | T | V | W | X | Y | Z Symbols --bg-adaptive-radius nima command line option --bg-downscale nima command line option --bg-method nima command line option --bg-percentile nima command line option --bg-percentile-filter nima command line option --bg-radius nima command line option --bias bima-dark command line option bima-flat command line option bima-mflat command line option --channels-cl nima command line option --channels-ph nima command line option --clear-border nima command line option --dark nima command line option --fg-method nima command line option --flat nima command line option --hotpixels nima command line option --image-ratios nima command line option --min-size nima command line option --no-image-ratios nima command line option --output bima command line option nima command line option --randomwalk nima command line option --ratio-median-radii nima command line option --silent nima command line option --time bima-dark command line option --verbose nima command line option --version bima command line option nima command line option --watershed nima command line option --wiener nima command line option -d nima command line option -f nima command line option -o bima command line option nima command line option -s nima command line option -v nima command line option _ __hash__() (nima.nima.StagePosition method) (nima.nima.VoxelSize method) __post_init__() (nima.nima.Metadata method) __repr__() (nima.nima.Channel method) (nima.nima.Metadata method) (nima.nima.StagePosition method) A attenuation (nima.nima.Channel attribute) B bima command line option --output --version -o bima-bias command line option FPATH bima-dark command line option --bias --time FPATH bima-flat command line option --bias FPATH bima-mflat command line option --bias GLOBPATH bima-plot command line option FPATH binning (nima.nima.Channel attribute) bits (nima.nima.Metadata attribute) C Channel (class in nima.nima) CHANNELS nima command line option channels (nima.nima.Metadata attribute) correct_hotpixel() (in module nima.nima) D d_bg() (in module nima.nima) d_mask_label() (in module nima.nima) d_meas_props() (in module nima.nima) d_median() (in module nima.nima) d_plot_meas() (in module nima.nima) d_ratio() (in module nima.nima) d_shading() (in module nima.nima) d_show() (in module nima.nima) date (nima.nima.Metadata attribute) dimension_order (nima.nima.Metadata attribute) F filters (nima.nima.Channel attribute) FPATH bima-bias command line option bima-dark command line option bima-flat command line option bima-plot command line option G gain (nima.nima.Channel attribute) gen_bias() (in module nima.generat) gen_flat() (in module nima.generat) gen_frame() (in module nima.generat) gen_object() (in module nima.generat) gen_objs() (in module nima.generat) GLOBPATH bima-mflat command line option H hotpixels() (in module nima.nima) I ImageObjsParams (class in nima.generat) M max_fluor (nima.generat.ImageObjsParams attribute) max_num_objects (nima.generat.ImageObjsParams attribute) max_radius (nima.generat.ImageObjsParams attribute) Metadata (class in nima.nima) min_radius (nima.generat.ImageObjsParams attribute) module nima.generat nima.nima MultiplePositionsError N name (nima.nima.Metadata attribute) ncols (nima.generat.ImageObjsParams attribute) nima command line option --bg-adaptive-radius --bg-downscale --bg-method --bg-percentile --bg-percentile-filter --bg-radius --channels-cl --channels-ph --clear-border --dark --fg-method --flat --hotpixels --image-ratios --min-size --no-image-ratios --output --randomwalk --ratio-median-radii --silent --verbose --version --watershed --wiener -d -f -o -s -v CHANNELS TIFFSTK nima.generat module nima.nima module nrows (nima.generat.ImageObjsParams attribute) O objective (nima.nima.Metadata attribute) P plt_img_profile() (in module nima.nima) plt_img_profile_2() (in module nima.nima) process_watershed() (in module nima.nima) R rdr (nima.nima.Metadata attribute) read_tiff() (in module nima.nima) read_tiffmd() (in module nima.nima) S size_c (nima.nima.Metadata attribute) size_s (nima.nima.Metadata attribute) size_t (nima.nima.Metadata attribute) size_x (nima.nima.Metadata attribute) size_y (nima.nima.Metadata attribute) size_z (nima.nima.Metadata attribute) stage_position (nima.nima.Metadata attribute) StagePosition (class in nima.nima) T tcz_deltat (nima.nima.Metadata attribute) TIFFSTK nima command line option V voxel_size (nima.nima.Metadata attribute) VoxelSize (class in nima.nima) W wavelength (nima.nima.Channel attribute) X x (nima.nima.StagePosition attribute) (nima.nima.VoxelSize attribute) Y y (nima.nima.StagePosition attribute) (nima.nima.VoxelSize attribute) Z z (nima.nima.StagePosition attribute) (nima.nima.VoxelSize attribute)