Tutorials

This part of the documentation guides you through all of the library’s usage patterns.

• 1. nima_io: Microscopy Data Reading Tutorial
  • 1.1. Setup
  • 1.2. 1. Single-scene OME-TIFF
    • 1.2.1. OME Metadata
    • 1.2.2. Per-channel acquisition settings
    • 1.2.3. Channel naming
  • 1.3. 2. Multi-channel time-series OME-TIFF
  • 1.4. 3. File sequences with tifffile.TiffSequence
  • 1.5. 4. Tiled images (FEI multi-scene)
    • 1.5.1. 4a. Regular tile grid (t4_1.tif)
    • 1.5.2. 4b. Tile grid with void tiles (tile6_1.tif)
    • 1.5.3. Stage positions
  • 1.6. 5. TF8 format (.tf8)
  • 1.7. 6. Large single-scene image (exp2_2.tif)
  • 1.8. 7. Leica LIF files
  • 1.9. 8. File comparison (diff)
  • 1.10. 9. Backend comparison: nima_io vs tifffile