Tutorials

This part of the documentation guides you through all of the library’s usage patterns.

• 1. Reading Microscopy Data in Python
  • 1.1. Data Path Assignment and Imports
  • 1.2. Skimage and Tifffile
  • 1.3. nima_io
    • 1.3.1. read
    • 1.3.2. Stitch
  • 1.4. nima_io.read
    • 1.4.1. PIMS
  • 1.5. ImageIO
  • 1.6. AICSImageIO
  • 1.7. dask_image
  • 1.8. bioio-bioformats
  • 1.9. bfio
  • 1.10. PIMS
  • 1.11. PyOMETiff
  • 1.12. Final Note
• 2. Development
  • 2.1. XML
  • 2.2. md vs root (to remember)