Tutorials

This part of the documentation guides you through all of the library’s usage patterns.

• 1. Levenberg Marquardt Fitting
  • 1.1. Conventions
  • 1.2. Single Cl titration.
    • 1.2.1. Using clophfit.binding
  • 1.3. Fit titration with multiple datasets
    • 1.3.1. lmfit of single y1 using analytical Jacobian
    • 1.3.2. using lmfit with np.r_ trick
    • 1.3.3. lmfit constraints aiming for generality
    • 1.3.4. lmfit.Model
    • 1.3.5. using clophfit.binding
  • 1.4. Model: example 2P Cl–ratio
• 2. Getting started with prtecan
  • 2.1. Parsing a Single Tecan Files
  • 2.2. Titration inherits TecanfilesGroup
  • 2.3. Group a list of tecan files into a titration
    • 2.3.1. Reassign Buffer Wells
  • 2.4. Fitting
    • 2.4.1. Choose buffer value to be subtracted between mean values and ODR fitted values.
    • 2.4.2. Posterior analysis with emcee
    • 2.4.3. Cl titration analysis
    • 2.4.4. Plotting
    • 2.4.5. selection
    • 2.4.6. combining
• 3. Getting started with prenspire
• 4. Old scripts
  • 4.1. fit_titration.py
  • 4.2. fit_titration_global.py
  • 4.3. IBF database uses
• 5. new