Tutorials

This part of the documentation guides you through all of the library’s usage patterns.

• 1. Levenberg Marquardt Fitting
  • 1.1. Conventions
  • 1.2. Single Cl titration.
    • 1.2.1. Using clophfit.fitting
  • 1.3. Fit titration with multiple datasets
    • 1.3.1. lmfit of single y1 using analytical Jacobian
    • 1.3.2. using lmfit with np.r_ trick
    • 1.3.3. lmfit constraints aiming for generality
    • 1.3.4. lmfit.Model
    • 1.3.5. using clophfit.fitting
  • 1.4. Model: example 2P Cl–ratio
• 2. PRTECAN Tutorial
  • 2.1. 1) Understanding Tecan file structure
  • 2.2. 2) Grouping files: manual and convenience constructor
  • 2.3. 3) Build a titration from a list file
  • 2.4. 4) Load plate scheme and additions
  • 2.5. 5) Quick look at fitting and results
  • 2.6. 6) Quality control and utilities
    • 2.6.1. Posterior
    • 2.6.2. Combining
  • 2.7. 7) Background method comparison
  • 2.8. Cl titration analysis
  • 2.9. 8) Batch export (optional)
• 3. Getting started with prenspire
• 4. Old scripts
  • 4.1. fit_titration.py
  • 4.2. fit_titration_global.py
  • 4.3. IBF database uses
• 5. new